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X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(DAniF)(CO3)3] in condition B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 2 M sodium formate and 0.1 M Hepes, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.01 38.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.62 α = 90 b = 76.62 β = 90 c = 37.08 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 54.18 100 0.131 0.997 14.4 20.7 36175
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.21 1.106 0.843 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.19 54.179 35971 1783 99.981 0.196 0.1947 0.2044 0.2124 0.227 15.858
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.072 -0.072 0.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.111 r_dihedral_angle_3_deg 13.961 r_dihedral_angle_2_deg 8.575 r_dihedral_angle_1_deg 6.734 r_lrange_it 5.345 r_lrange_other 5.326 r_scangle_it 4.053 r_scangle_other 4.051 r_scbond_other 2.642 r_scbond_it 2.639
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.111 r_dihedral_angle_3_deg 13.961 r_dihedral_angle_2_deg 8.575 r_dihedral_angle_1_deg 6.734 r_lrange_it 5.345 r_lrange_other 5.326 r_scangle_it 4.053 r_scangle_other 4.051 r_scbond_other 2.642 r_scbond_it 2.639 r_mcangle_other 2.184 r_mcangle_it 2.17 r_angle_refined_deg 1.827 r_mcbond_it 1.493 r_mcbond_other 1.483 r_angle_other_deg 0.651 r_symmetry_nbd_refined 0.277 r_nbd_refined 0.241 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.169 r_metal_ion_refined 0.166 r_nbd_other 0.166 r_symmetry_xyhbond_nbd_refined 0.1 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_symmetry_xyhbond_nbd_other 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing