X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7AWC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52931.6 M Ammoniumsulphate, 0.1 M Tris/HCl pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.5952.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.413α = 90
b = 60.611β = 102.859
c = 117.945γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2023-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8544.281000.99917.1755065
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.890.903

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.8544.2855064277899.9890.1730.17070.212846.811
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.4371.291.965-1.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.657
r_dihedral_angle_6_deg16.162
r_lrange_it10.206
r_lrange_other10.206
r_dihedral_angle_2_deg9.025
r_scangle_it8.842
r_scangle_other8.762
r_scbond_it6.215
r_scbond_other6.165
r_mcangle_other5.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.657
r_dihedral_angle_6_deg16.162
r_lrange_it10.206
r_lrange_other10.206
r_dihedral_angle_2_deg9.025
r_scangle_it8.842
r_scangle_other8.762
r_scbond_it6.215
r_scbond_other6.165
r_mcangle_other5.92
r_mcangle_it5.919
r_dihedral_angle_1_deg5.554
r_mcbond_it4.573
r_mcbond_other4.573
r_angle_refined_deg2.1
r_angle_other_deg0.674
r_nbd_refined0.239
r_symmetry_nbd_refined0.211
r_nbtor_refined0.195
r_symmetry_nbd_other0.191
r_nbd_other0.179
r_ncsr_local_group_10.159
r_xyhbond_nbd_refined0.156
r_symmetry_xyhbond_nbd_refined0.133
r_chiral_restr0.1
r_symmetry_nbtor_other0.08
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4236
Nucleic Acid Atoms
Solvent Atoms177
Heterogen Atoms79

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing