8P9D

Crystal structure of p63-p73 heterotetramer (tetramerisation domain) in complex with darpin 1810 A2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7293.1520% PEG3350, 0.1M bis-tris propane pH 7.0, 0.2M salicylic, sodium salt
Crystal Properties
Matthews coefficientSolvent content
2.9357.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.729α = 90
b = 113.186β = 90
c = 135.227γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-05-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.745.0899.50.0830.0980.0390.99811.8617853
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.850.8481.010.3930.75126.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.743.41689690699.330.216560.214660.25164RANDOM82.644
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.265.12-0.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.12
r_dihedral_angle_4_deg22.793
r_dihedral_angle_3_deg17.062
r_dihedral_angle_1_deg6.804
r_long_range_B_refined6.43
r_long_range_B_other6.43
r_scangle_other4.637
r_mcangle_it3.957
r_mcangle_other3.957
r_scbond_it2.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.12
r_dihedral_angle_4_deg22.793
r_dihedral_angle_3_deg17.062
r_dihedral_angle_1_deg6.804
r_long_range_B_refined6.43
r_long_range_B_other6.43
r_scangle_other4.637
r_mcangle_it3.957
r_mcangle_other3.957
r_scbond_it2.89
r_scbond_other2.885
r_mcbond_it2.52
r_mcbond_other2.519
r_angle_other_deg1.119
r_angle_refined_deg1.116
r_chiral_restr0.047
r_bond_refined_d0.009
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3458
Nucleic Acid Atoms
Solvent Atoms6
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing