8P6H
Bovine naive ultralong antibody AbBLV5B8* collected at 100K
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 10% w/v PEG 20000, 20% v/v PEG MME 550, 0.02M Sodium L-glutamate, 0.02M DL-Alanine, 0.02M Glycine, 0.02M DL-Lysine HCl, 0.02M DL-Serine, 0.1 M MOPS/HEPES-Na |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.09 | 41.11 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 161.16 | α = 90 |
b = 49.045 | β = 90.87 |
c = 60.381 | γ = 90 |
Symmetry | |
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Space Group | C 1 2 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | PIXEL | DECTRIS EIGER X 16M | 130x80 microred aperture, horizontally and vertically focussing mirrors, 4xslits, variable focus beam | 2020-02-21 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | DIAMOND BEAMLINE I04 | 0.9795 | Diamond | I04 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||
1 | 1.46 | 80.57 | 100 | 0.07 | 0.076 | 0.029 | 0.999 | 12 | 6.6 | 82095 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Rrim I (All) | Rpim I (All) | CC (Half) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||
1 | 1.46 | 1.49 | 100 | 1.825 | 2.019 | 0.847 | 0.365 | 5.7 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 1.46 | 80.57 | 78110 | 3984 | 99.99 | 0.22379 | 0.22186 | 0.26109 | RANDOM | 29.799 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-1.01 | 0.22 | 1.4 | -0.39 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_3_deg | 13.69 |
r_long_range_B_refined | 7.933 |
r_long_range_B_other | 7.933 |
r_dihedral_angle_1_deg | 7.672 |
r_dihedral_angle_2_deg | 7.25 |
r_scangle_other | 5.371 |
r_mcangle_it | 4.779 |
r_mcangle_other | 4.778 |
r_scbond_it | 3.547 |
r_scbond_other | 3.546 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 3165 |
Nucleic Acid Atoms | |
Solvent Atoms | 290 |
Heterogen Atoms |
Software
Software | |
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Software Name | Purpose |
REFMAC | refinement |
pointless | data scaling |
xia2 | data reduction |
PHASER | phasing |