8P66
Structural basis of aggregate binding/recognition by the AAA+ disaggregase ClpG
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
2 | 3D 1H-13C NOESY | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
3 | 3D HNCACB | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
4 | 3D CBCA(CO)NH | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
5 | 3D HNCA | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
6 | 3D HCCH-TOCSY | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
7 | 3D HNCO | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
8 | 3D H(CCO)NH | 0.8 mM [U-100% 13C; U-100% 15N] ClpG | 95% H2O/5% D2O | KCl 50mM mM | 6.5 | 1 atm | 298 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | refinement in explicit water | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | 5.0.4 | Johnson, One Moon Scientific |
2 | structure calculation | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | structure calculation | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |