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Full-length bacterial polysaccharide co-polymerase WzzE mutant R267E from E. coli. C4 symmetry
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8BHW
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.447 f_angle_d 0.618 f_chiral_restr 0.035 f_plane_restr 0.004 f_bond_d 0.003
Sample Bacterial Polysaccharide Co-polymerase WzzE
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 308817 Reported Resolution (Å) 2.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Map-Model Fitting and Refinement Id 1 (8BHW) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 125 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 1900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 3 MODEL FITTING PHENIX MODEL REFINEMENT PHENIX 1.20.1_4487: INITIAL EULER ASSIGNMENT cryoSPARC 3 FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC 3 RECONSTRUCTION cryoSPARC 3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2349935