Experiment: 8OQW

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.2-0.3 M ammonium sulfate, 14-22% (w/v) PEG3350, bis-tris/citric acid pH 4.1-6.4

Crystal Properties
Matthews coefficient	Solvent content
2.32	46.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.759	α = 74.3
b = 59.51	β = 75.274
c = 96.708	γ = 65.953

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2018-07-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.976	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.05	49.503	96.1	0.997	9.06	2.37		68635

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.05	2.17			0.751

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1X7F	2.05	49.503	68630	1716	96.216	0.202	0.2006	0.2486	37.311

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.936	0.221	-1.089	2.483	1.892	-1.828

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.358
r_dihedral_angle_6_deg	13.693
r_dihedral_angle_2_deg	11.515
r_dihedral_angle_1_deg	6.613
r_lrange_it	6.131
r_scangle_it	2.542
r_scbond_it	1.764
r_mcangle_it	1.619
r_angle_refined_deg	1.126
r_mcbond_it	1.027

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.358
r_dihedral_angle_6_deg	13.693
r_dihedral_angle_2_deg	11.515
r_dihedral_angle_1_deg	6.613
r_lrange_it	6.131
r_scangle_it	2.542
r_scbond_it	1.764
r_mcangle_it	1.619
r_angle_refined_deg	1.126
r_mcbond_it	1.027
r_nbtor_refined	0.307
r_nbd_refined	0.221
r_symmetry_nbd_refined	0.213
r_xyhbond_nbd_refined	0.147
r_symmetry_xyhbond_nbd_refined	0.146
r_chiral_restr	0.092
r_gen_planes_refined	0.005
r_bond_refined_d	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8679
Nucleic Acid Atoms
Solvent Atoms	358
Heterogen Atoms	36

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.