8OQE

Dirhodium tetraacetate/ribonuclease A adduct in the P3221 space group (6 h soaking)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.2	293	2.5 M NaCl 3.3 M HCOONa 0.1 M Acetate buffer

Crystal Properties
Matthews coefficient	Solvent content
3.05	59.66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 66.795	α = 90
b = 66.795	β = 90
c = 64.904	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	RIGAKU HyPix-6000HE		2022-09-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU PhotonJet-R	1.5406

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	21.86	100	0.079	0.028	0.999	20	8.5		27269

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53	99.8		2.022	0.975	0.223	0.8	5.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.5	21.601	27239	1367	99.941	0.18	0.1785	0.2157	18.86

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.004	-0.002		-0.004		0.014

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.429
r_dihedral_angle_3_deg	13.826
r_dihedral_angle_2_deg	8.164
r_lrange_it	7.303
r_dihedral_angle_1_deg	6.778
r_lrange_other	6.658
r_scangle_other	4.155
r_scangle_it	4.153
r_mcangle_it	3.539
r_mcangle_other	3.537
r_angle_refined_deg	3.359
r_scbond_it	2.738
r_scbond_other	2.733
r_mcbond_other	2.367
r_mcbond_it	2.365
r_angle_other_deg	0.582
r_xyhbond_nbd_refined	0.301
r_symmetry_xyhbond_nbd_refined	0.221
r_nbd_refined	0.216
r_symmetry_nbd_other	0.198
r_symmetry_nbd_refined	0.188
r_nbtor_refined	0.181
r_nbd_other	0.161
r_chiral_restr	0.088
r_symmetry_nbtor_other	0.087
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_gen_planes_other	0.004
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	951
Nucleic Acid Atoms
Solvent Atoms	178
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
PHASER	phasing