☰ Navigation Tabs
HSV-1 DNA polymerase-processivity factor complex in exonuclease state active site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7LUF
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.32 r_lrange_other 16.256 r_lrange_it 16.249 r_dihedral_angle_3_deg 13.002 r_mcangle_it 7.984 r_mcangle_other 7.983 r_scangle_it 7.858 r_scangle_other 7.857 r_dihedral_angle_2_deg 6.56 r_dihedral_angle_1_deg 6.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.32 r_lrange_other 16.256 r_lrange_it 16.249 r_dihedral_angle_3_deg 13.002 r_mcangle_it 7.984 r_mcangle_other 7.983 r_scangle_it 7.858 r_scangle_other 7.857 r_dihedral_angle_2_deg 6.56 r_dihedral_angle_1_deg 6.556 r_mcbond_it 4.424 r_mcbond_other 4.424 r_scbond_it 4.362 r_scbond_other 4.362 r_dihedral_angle_other_2_deg 1.72 r_angle_refined_deg 1.406 r_angle_other_deg 0.475 r_metal_ion_refined 0.259 r_nbd_refined 0.21 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.146 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample HSV-1 DNA polymerase-processivity factor complex in exonuclease state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 142948 Reported Resolution (Å) 1.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (7LUF) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 58
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.3 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING UCSF ChimeraX MODEL REFINEMENT Coot INITIAL EULER ASSIGNMENT cryoSPARC 3.3 FINAL EULER ASSIGNMENT cryoSPARC 4 RECONSTRUCTION cryoSPARC 4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION