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Human adenovirus type 25 fiber-knob protein complexed with sialic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 0.1 M SPG buffer, 25 % w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.42 49.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.562 α = 90 b = 179.321 β = 90 c = 207.897 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.88561 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.51 64.64 100 0.218 0.234 0.084 0.988 6 7.7 162833
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.51 2.58 100 2.268 2.427 0.86 0.451 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.51 64.64 154712 7943 99.9 0.22175 0.22084 0.2216 0.23921 0.2392 RANDOM 58.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 -1.24 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_3_deg 14.203 r_dihedral_angle_4_deg 11.351 r_dihedral_angle_1_deg 7.606 r_long_range_B_refined 5.314 r_long_range_B_other 5.31 r_mcangle_it 2.824 r_mcangle_other 2.824 r_scangle_other 1.983 r_mcbond_it 1.567
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_3_deg 14.203 r_dihedral_angle_4_deg 11.351 r_dihedral_angle_1_deg 7.606 r_long_range_B_refined 5.314 r_long_range_B_other 5.31 r_mcangle_it 2.824 r_mcangle_other 2.824 r_scangle_other 1.983 r_mcbond_it 1.567 r_mcbond_other 1.567 r_angle_refined_deg 1.303 r_angle_other_deg 1.13 r_scbond_it 1.115 r_scbond_other 1.115 r_chiral_restr 0.058 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 34683 Nucleic Acid Atoms Solvent Atoms 445 Heterogen Atoms 504
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction