8KFP

Solution structure of Drosophila melanogaster R2D2 dsRBD1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC500 uM [U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
22D 1H-13C HSQC500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
33D HNCO500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
53D HNCACB500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
63D HN(CA)CO500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
73D HN(COCA)CB500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
83D H(CCO)NH TOCSY500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
93D C(CO)NH TOCSY500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
103D 1H-15N NOESY500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
113D 1H-13C NOESY500 uM [U-99% 13C; U-99% 15N] R2D2 dsRBD190% H2O/10% D2O150 mM7.01 atm298Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsRosetta
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number5000
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCARA1.8.4Keller and Wuthrich
2structure calculationRosetta2021.16.61629Raman, S., Lange, O. F., Rossi, P., Tyka, M., Wang, X., Aramini, J., ... & Baker, D. (2010). NMR structure determination for larger proteins using backbone-only data. Science, 327(5968), 1014-1018.
4peak pickingCARA1.8.4Keller and Wuthrich
5collectionTopSpin2.1Bruker Biospin
6processingTopSpin4.0.6Bruker Biospin