8KCQ
Solution structures of the N-terminal divergent caplonin homology (NN-CH) domains of human intraflagellar transport protein 54
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C,15N-SEPARATED_NOESY SPECTRA | 0.8 mM [U-99% 13C; U-99% 15N] NN-CH domain of human IFT54, 100 mM None NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % None NaN3 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 800 |
2 | 3D CBCA(CO)NH | 0.8 mM [U-99% 13C; U-99% 15N] NN-CH domain of human IFT54, 100 mM None NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % None NaN3 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 600 |
3 | 3D HNCACB | 0.8 mM [U-99% 13C; U-99% 15N] NN-CH domain of human IFT54, 100 mM None NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % None NaN3 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 600 |
4 | 3D HCCH-COSY | 0.8 mM [U-99% 13C; U-99% 15N] NN-CH domain of human IFT54, 100 mM None NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % None NaN3 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 600 |
5 | 3D HCCH-TOCSY | 0.8 mM [U-99% 13C; U-99% 15N] NN-CH domain of human IFT54, 100 mM None NaCl, 1 mM [U-99% 2H] d-DTT, 20 mM [U-99% 2H] d-Tris HCl, 0.02 % None NaN3 | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
sumilated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with favorable non-bond energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | KUJIRA | 0.863 | N. Kobayashi, T. Kigawa, S. Yokoyama |
2 | structure calculation | CYANA | 2.2 | Guntert, Mumenthaler and Wuthrich |
3 | refinement | Amber | 12 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
4 | peak picking | MagRO-NMRView | 1.2.38 | N. Kobayashi |
5 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
6 | processing | TopSpin | Bruker Biospin |