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Crystal structure of AetF in complex with FAD and L-tryptophan
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 30% PEG 6000, 0.1 M Tris pH 8.0, 8 mg/mL AetF (5 mM L-Trp, 5 mM DTT)
Crystal Properties Matthews coefficient Solvent content 1.98 38.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.24 α = 90 b = 74.856 β = 90 c = 143.059 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2023-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 33.16 99.9 0.997 9.6 6.7 32585
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.23 0.803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 33.16 30816 1578 99.61 0.20936 0.20555 0.21 0.285 0.2854 RANDOM 38.467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.41 -2.1 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.813 r_dihedral_angle_3_deg 19.81 r_dihedral_angle_4_deg 17.369 r_dihedral_angle_1_deg 7.923 r_long_range_B_refined 7.488 r_long_range_B_other 7.484 r_scangle_other 5.311 r_mcangle_it 4.954 r_mcangle_other 4.954 r_scbond_it 3.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.813 r_dihedral_angle_3_deg 19.81 r_dihedral_angle_4_deg 17.369 r_dihedral_angle_1_deg 7.923 r_long_range_B_refined 7.488 r_long_range_B_other 7.484 r_scangle_other 5.311 r_mcangle_it 4.954 r_mcangle_other 4.954 r_scbond_it 3.56 r_scbond_other 3.56 r_mcbond_it 3.414 r_mcbond_other 3.395 r_angle_refined_deg 1.627 r_angle_other_deg 1.278 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5202 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement SAINT data scaling SAINT data reduction PHASER phasing