8JOG

solution structure of Ras Binding Domein (RBD) in C-RAF with negative allosteric modulator.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
112D 1H-13C HSQC aliphatic0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
142D 1H-13C HSQC aromatic0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
23D CBCA(CO)NH0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
63D HNCACB0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
43D HNCA0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
73D HN(CO)CA0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
53D HNCO0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
133D HN(CA)CO0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
123D 1H-15N NOESY0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
83D 1H-13C NOESY aliphatic0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
93D 1H-13C NOESY aromatic0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
103D HCCH-TOCSY0.3 mM [U-100% 13C; U-100% 15N] Serin/threonine protein kinase C-RAF, 25 mM sodium phosphate, 50 mM sodium chloride, 10 mM magnesium dichloride90% H2O/10% D2O85 mM6.8ambient atm298Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteria20
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentMagRO-NMRViewKobayashi et al.
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
4peak pickingMagRO-NMRViewKobayashi et al.
5processingnmrp