X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOther8JG7

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2892.8 M Sodium acetate trihydrate, pH 7.0
Crystal Properties
Matthews coefficientSolvent content
4.1970.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 163.996α = 90
b = 163.996β = 90
c = 50.209γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.979SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.65099.60.1563.81324010
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.641000.56212.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.617.6222813118699.60.1740.1720.223RANDOM45.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.090.18-0.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg17.527
r_dihedral_angle_2_deg14.405
r_long_range_B_refined8.797
r_long_range_B_other8.793
r_dihedral_angle_1_deg7.349
r_scangle_other6.782
r_mcangle_it6.304
r_mcangle_other6.303
r_scbond_it4.567
r_scbond_other4.566
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg17.527
r_dihedral_angle_2_deg14.405
r_long_range_B_refined8.797
r_long_range_B_other8.793
r_dihedral_angle_1_deg7.349
r_scangle_other6.782
r_mcangle_it6.304
r_mcangle_other6.303
r_scbond_it4.567
r_scbond_other4.566
r_mcbond_it4.253
r_mcbond_other4.252
r_angle_refined_deg1.601
r_angle_other_deg0.552
r_chiral_restr0.078
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3258
Nucleic Acid Atoms
Solvent Atoms60
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
HKL-3000data reduction
PHASERphasing