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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6Y0G
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.603 f_angle_d 0.6013 f_chiral_restr 0.0361 f_bond_d 0.0054 f_plane_restr 0.0046
Sample The complex of Human 80S Ribosome with mRNA and A-, P- site tRNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 128240 Reported Resolution (Å) 2.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6Y0G) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.8.2 CTF CORRECTION RELION 3.1.3 MODEL FITTING UCSF Chimera 1.1.4 MODEL FITTING Coot 0.9.5 MODEL REFINEMENT PHENIX 1.18 MODEL REFINEMENT Coot 0.9.5 INITIAL EULER ASSIGNMENT RELION 3.1.3 FINAL EULER ASSIGNMENT RELION 3.1.3 CLASSIFICATION RELION 3.1.3 RECONSTRUCTION RELION 3.1.3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 381997