X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293PEG3350, 50 mM potassium phosphate (pH 7.5), 5% glycerol, 4% DMSO
Crystal Properties
Matthews coefficientSolvent content
2.5351.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 187.413α = 90
b = 38.573β = 105.11
c = 95.99γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 S 9M2019-04-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL02U10.987SSRFBL02U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.392.6799.60.050.2490.981.383.6108443
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.760.1520.1680.5710000000000001

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.7692.671656191699.690.227470.222750.31221RANDOM82.949
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.160.17-0.08-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.081
r_dihedral_angle_4_deg22.716
r_dihedral_angle_3_deg17.79
r_long_range_B_refined12.452
r_long_range_B_other12.451
r_scangle_other9.538
r_mcangle_it8.253
r_mcangle_other8.252
r_scbond_it6.293
r_scbond_other6.291
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.081
r_dihedral_angle_4_deg22.716
r_dihedral_angle_3_deg17.79
r_long_range_B_refined12.452
r_long_range_B_other12.451
r_scangle_other9.538
r_mcangle_it8.253
r_mcangle_other8.252
r_scbond_it6.293
r_scbond_other6.291
r_dihedral_angle_1_deg6.025
r_mcbond_other5.556
r_mcbond_it5.554
r_angle_refined_deg1.783
r_angle_other_deg1.047
r_chiral_restr0.078
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4443
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms122

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata scaling
HKL-3000data reduction
PHASERphasing