☰ Navigation Tabs
Crystal structure of Est30
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 Zinc acetate tetrahydrate, PEG3350
Crystal Properties Matthews coefficient Solvent content 2.84 56.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.964 α = 90 b = 59.988 β = 99.24 c = 166.039 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 49.54 100 0.99 10.78 6.73 112238
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.48 0.6998
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.42 49.54 106615 5611 99.87 0.21699 0.21406 0.2246 0.27318 0.2768 RANDOM 51.686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 -1.11 4.36 -4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.059 r_long_range_B_refined 8.199 r_long_range_B_other 8.183 r_dihedral_angle_1_deg 6.929 r_dihedral_angle_2_deg 6.183 r_scangle_other 5.846 r_mcangle_it 5.507 r_mcangle_other 5.507 r_scbond_it 3.731 r_scbond_other 3.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.059 r_long_range_B_refined 8.199 r_long_range_B_other 8.183 r_dihedral_angle_1_deg 6.929 r_dihedral_angle_2_deg 6.183 r_scangle_other 5.846 r_mcangle_it 5.507 r_mcangle_other 5.507 r_scbond_it 3.731 r_scbond_other 3.73 r_mcbond_it 3.614 r_mcbond_other 3.614 r_angle_refined_deg 1.318 r_angle_other_deg 0.465 r_chiral_restr 0.123 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18229 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALEPACK data scaling PHASER phasing