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Crystal Structure of Intracellular B30.2 Domain of BTN2A2 Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZXK 5ZXK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2 M sodium citrate tribasic dihydrate, 20% w/v polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.18 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.673 α = 90 b = 59.843 β = 90 c = 127.612 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2021-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 29.94 99.9 0.1057 11.6 9.62 24957
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.15 0.4876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZXK 2.12 29.94 23654 1227 99.84 0.2071 0.2042 0.2119 0.2603 0.2617 RANDOM 36.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 -0.74 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.141 r_dihedral_angle_4_deg 17.586 r_dihedral_angle_3_deg 15.817 r_dihedral_angle_1_deg 8.198 r_angle_refined_deg 1.545 r_angle_other_deg 1.22 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.141 r_dihedral_angle_4_deg 17.586 r_dihedral_angle_3_deg 15.817 r_dihedral_angle_1_deg 8.198 r_angle_refined_deg 1.545 r_angle_other_deg 1.22 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3158 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SADABS data scaling PDB_EXTRACT data extraction Coot model building PHASER phasing SAINT data reduction