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Cryo-EM structure of the zeaxanthin-bound kin4B8
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.529 r_long_range_B_refined 17.889 r_long_range_B_other 17.884 r_dihedral_angle_4_deg 17.128 r_dihedral_angle_3_deg 15.096 r_scangle_other 14.149 r_scbond_it 10.043 r_scbond_other 10.038 r_mcangle_other 9.63 r_mcangle_it 9.626
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.529 r_long_range_B_refined 17.889 r_long_range_B_other 17.884 r_dihedral_angle_4_deg 17.128 r_dihedral_angle_3_deg 15.096 r_scangle_other 14.149 r_scbond_it 10.043 r_scbond_other 10.038 r_mcangle_other 9.63 r_mcangle_it 9.626 r_mcbond_it 7.852 r_mcbond_other 7.837 r_dihedral_angle_1_deg 3.973 r_angle_other_deg 1.613 r_angle_refined_deg 1.332 r_chiral_restr 0.084 r_bond_other_d 0.031 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details Vitrification carried out in ethane atmosphere.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 4337540 Reported Resolution (Å) 2.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50.14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION RELION 3.1 MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT cryoSPARC 2.0 FINAL EULER ASSIGNMENT cryoSPARC 2.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION