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Crystal Structure of CbAR mutant (H162F) in complex with NADP+ and halogenated aryl ketone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M HEPES pH 7.5, 15% isopropanol and 19% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.15 42.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.867 α = 90 b = 124.867 β = 90 c = 133.195 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON II 2022-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE BRUKER D8 QUEST 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.875 24.25 99.6 0.987 8.3 9.8 23926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.875 2.978 0.303
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7YB1 2.9 24.05 22831 1041 99.68 0.20553 0.2017 0.2172 0.28943 0.2922 RANDOM 28.083
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.68 -1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.514 r_dihedral_angle_4_deg 17.833 r_dihedral_angle_3_deg 17.734 r_dihedral_angle_1_deg 7.911 r_long_range_B_other 6.232 r_long_range_B_refined 6.231 r_scangle_other 3.66 r_mcangle_it 3.021 r_mcangle_other 3.021 r_scbond_it 2.423
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.514 r_dihedral_angle_4_deg 17.833 r_dihedral_angle_3_deg 17.734 r_dihedral_angle_1_deg 7.911 r_long_range_B_other 6.232 r_long_range_B_refined 6.231 r_scangle_other 3.66 r_mcangle_it 3.021 r_mcangle_other 3.021 r_scbond_it 2.423 r_scbond_other 2.422 r_mcbond_it 1.839 r_mcbond_other 1.834 r_angle_refined_deg 1.616 r_angle_other_deg 1.238 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7595 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 240
Software Software Software Name Purpose SAINT data scaling REFMAC refinement SAINT data reduction MOLREP phasing