8H8M

Crystal structure of apo-E53F/E57F/E60F/E64F-rHLFr

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	Ammonium sulphate, Cadmium sulphate

Crystal Properties
Matthews coefficient	Solvent content
3.11	60.41

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 181.108	α = 90
b = 181.108	β = 90
c = 181.108	γ = 90

Symmetry
Space Group	F 4 3 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	93	PIXEL	RIGAKU HyPix-6000HE		2022-03-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU PhotonJet-R	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	20.257	100	1	28.9	12.2		41145

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53			0.896

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1DAT	1.5	20.257	41036	2087	99.65	0.16	0.1592	0.1762	12.727

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.906
r_dihedral_angle_4_deg	18.648
r_dihedral_angle_3_deg	13.148
r_lrange_it	5.801
r_lrange_other	5.49
r_dihedral_angle_1_deg	4.784
r_scangle_other	3.753
r_scangle_it	3.752
r_scbond_it	2.418
r_scbond_other	2.397
r_mcangle_other	2.111
r_mcangle_it	2.108
r_angle_refined_deg	1.907
r_angle_other_deg	1.604
r_mcbond_it	1.353
r_mcbond_other	1.314
r_metal_ion_refined	0.453
r_symmetry_metal_ion_refined	0.453
r_symmetry_nbd_refined	0.332
r_nbd_refined	0.249
r_nbtor_refined	0.186
r_nbd_other	0.177
r_xyhbond_nbd_refined	0.171
r_symmetry_xyhbond_nbd_refined	0.17
r_symmetry_nbd_other	0.168
r_chiral_restr	0.095
r_symmetry_nbtor_other	0.089
r_symmetry_xyhbond_nbd_other	0.046
r_bond_refined_d	0.016
r_gen_planes_refined	0.01
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1378
Nucleic Acid Atoms
Solvent Atoms	233
Heterogen Atoms	22

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
MOLREP	phasing