Experiment: 8GBT

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2DYR

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	6.8	277	PEG4000, Sodium Phosphate, decylmaltoside

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	CS-PAD CXI-1		2016-06-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SLAC LCLS BEAMLINE CXI	1.321	SLAC LCLS	CXI

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.759	32.45	100	0.859	6.92	6.9		172414

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.87	2.99	100		0.226

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.8	32.002	172414	8688	99.355	0.225	0.223	0.2687	0.2867	58.179

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.65			0.949		0.701

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.052
r_dihedral_angle_3_deg	18.243
r_dihedral_angle_other_3_deg	16.272
r_dihedral_angle_4_deg	15.967
r_lrange_it	9.789
r_lrange_other	9.789
r_dihedral_angle_1_deg	7.345
r_scangle_it	6.493
r_scangle_other	6.493
r_mcangle_it	6.053

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.052
r_dihedral_angle_3_deg	18.243
r_dihedral_angle_other_3_deg	16.272
r_dihedral_angle_4_deg	15.967
r_lrange_it	9.789
r_lrange_other	9.789
r_dihedral_angle_1_deg	7.345
r_scangle_it	6.493
r_scangle_other	6.493
r_mcangle_it	6.053
r_mcangle_other	6.053
r_scbond_it	3.927
r_scbond_other	3.927
r_mcbond_it	3.717
r_mcbond_other	3.716
r_angle_refined_deg	1.553
r_angle_other_deg	1.13
r_nbd_refined	0.217
r_symmetry_nbd_refined	0.215
r_symmetry_nbd_other	0.18
r_nbtor_refined	0.175
r_xyhbond_nbd_refined	0.163
r_nbd_other	0.16
r_symmetry_xyhbond_nbd_refined	0.13
r_symmetry_xyhbond_nbd_other	0.101
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.072
r_metal_ion_refined	0.059
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	28488
Nucleic Acid Atoms
Solvent Atoms	245
Heterogen Atoms	2248

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8GBT | pdb_00008gbt