☰ Navigation Tabs
HIV-2 Gag Capsid from Immature Virus-like Particles
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WLV experimental model PDB 5L93
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.141 f_angle_d 0.644 f_chiral_restr 0.042 f_plane_restr 0.004 f_bond_d 0.002
Sample Human immunodeficiency virus type 2 (ISOLATE ROD)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details Leica GP2 Grid Plunger.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 46017 Reported Resolution (Å) 5.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 (2WLV, 5L93) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 750 Maximum Defocus (nm) 2250 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.1 IMAGE ACQUISITION SerialEM CTF CORRECTION Gctf 1.06 MODEL FITTING PHENIX INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION