X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5ILE 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE7.4296.32.3-2.6 M Ammonium Sulfate, 100 mM Tris-HCl, 1 mm EDTA, pH 7.4
Crystal Properties
Matthews coefficientSolvent content
1.8131.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.856α = 90
b = 29.027β = 105.89
c = 64.263γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 200K2017-07-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7550.0199.40.0530.02622.973.812746
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.7892.90.0980.1270.0790.9652

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5ILE1.75501207461999.450.15450.15220.201RANDOM18.131
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.080.010.060.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.834
r_dihedral_angle_4_deg14.519
r_dihedral_angle_3_deg14.288
r_dihedral_angle_1_deg5.288
r_angle_refined_deg2.06
r_angle_other_deg1.083
r_chiral_restr0.147
r_bond_refined_d0.019
r_gen_planes_refined0.011
r_gen_planes_other0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.834
r_dihedral_angle_4_deg14.519
r_dihedral_angle_3_deg14.288
r_dihedral_angle_1_deg5.288
r_angle_refined_deg2.06
r_angle_other_deg1.083
r_chiral_restr0.147
r_bond_refined_d0.019
r_gen_planes_refined0.011
r_gen_planes_other0.007
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1198
Nucleic Acid Atoms
Solvent Atoms85
Heterogen Atoms51

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing