☰ Navigation Tabs
Cryo-EM structure of BIRC6/Smac (from local refinement 1)
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.882 f_angle_d 0.542 f_chiral_restr 0.026 f_plane_restr 0.008 f_bond_d 0.003
Sample Baculoviral IAP repeat-containing protein 6
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 192025 Reported Resolution (Å) 3.44 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 56.379
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Data collection in counting mode, using multi-shot scheme (9 holes per stage position, 3 movies per hole)
EM Software Task Software Package Version PARTICLE SELECTION Topaz IMAGE ACQUISITION SerialEM 3.8.5 CTF CORRECTION cryoSPARC MODEL FITTING Coot MODEL REFINEMENT Coot MODEL REFINEMENT PHENIX MODEL REFINEMENT ISOLDE MODEL REFINEMENT UCSF ChimeraX MODEL REFINEMENT UCSF Chimera INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3192460