☰ Navigation Tabs
Crystal structure of ChoE in complex with acetate and tetraethylammonium (TEA)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 277 16% PEG 6000, 0.01M tri-sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.653 α = 90 b = 81.85 β = 99.61 c = 81.311 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97930 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 80.17 94.2 0.035 0.043 0.023 15.7 3.2 90356 90356
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.57 81.3 0.365 0.365 0.469 0.289 2.1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UQV 1.49 40.12 84446 4323 92.35 0.1986 0.1974 0.2034 0.2222 0.2294 RANDOM 25.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.99 0.55 -1.08 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.858 r_dihedral_angle_4_deg 21.607 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_1_deg 6.84 r_angle_refined_deg 2.133 r_angle_other_deg 1.637 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.858 r_dihedral_angle_4_deg 21.607 r_dihedral_angle_3_deg 14.034 r_dihedral_angle_1_deg 6.84 r_angle_refined_deg 2.133 r_angle_other_deg 1.637 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4448 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms 26
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing