☰ Navigation Tabs
Crystal structure of ChoE N147A mutant in complex with bromide ions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 277 15% PEG 20000, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.316 α = 90 b = 81.71 β = 98.99 c = 80.576 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.91988 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 79.586 97.2 0.1 0.127 0.048 14.1 6.9 50495 50495
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.92 91.6 0.817 0.817 0.962 0.363 0.9 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UQV 1.82 44.8 48028 2446 97.03 0.1702 0.1681 0.1813 0.2119 0.2219 RANDOM 23.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.05 0.26 -2.09 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.42 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 13.794 r_dihedral_angle_1_deg 7.01 r_angle_refined_deg 1.49 r_angle_other_deg 1.424 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.42 r_dihedral_angle_4_deg 21.154 r_dihedral_angle_3_deg 13.794 r_dihedral_angle_1_deg 7.01 r_angle_refined_deg 1.49 r_angle_other_deg 1.424 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4452 Nucleic Acid Atoms Solvent Atoms 578 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing