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Crystal structure of ChoE N147A mutant in complex with thiocholine and chloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 277 25% PEG 8000, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.673 α = 90 b = 81.8 β = 99.58 c = 81.099 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 79.968 91.6 0.036 0.043 0.023 16.6 3.4 110159 110159
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.45 95.2 0.589 0.589 0.699 0.371 1.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UQV 1.38 35.95 104631 5476 91.33 0.1694 0.1678 0.1759 0.2 0.2046 RANDOM 19.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5 0.14 -1.17 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.071 r_dihedral_angle_4_deg 19.007 r_dihedral_angle_3_deg 12.935 r_dihedral_angle_1_deg 6.515 r_angle_refined_deg 1.795 r_angle_other_deg 1.555 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.071 r_dihedral_angle_4_deg 19.007 r_dihedral_angle_3_deg 12.935 r_dihedral_angle_1_deg 6.515 r_angle_refined_deg 1.795 r_angle_other_deg 1.555 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4452 Nucleic Acid Atoms Solvent Atoms 666 Heterogen Atoms 28
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing