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Crystal structure of ChoE N147A mutant in complex with acetylthiocholine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 277 25% PEG 8000, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.632 α = 90 b = 81.786 β = 99.83 c = 81.258 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 80.064 96 0.045 0.054 0.029 14.5 3.4 83290 83290
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.62 81.8 0.492 0.492 0.602 0.341 1.6 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UQV 1.54 45 79187 4076 95.84 0.1551 0.1536 0.1652 0.1856 0.1983 RANDOM 22.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 0.13 -1 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.475 r_dihedral_angle_4_deg 18.458 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 6.356 r_angle_refined_deg 1.813 r_angle_other_deg 1.532 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.475 r_dihedral_angle_4_deg 18.458 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 6.356 r_angle_refined_deg 1.813 r_angle_other_deg 1.532 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4452 Nucleic Acid Atoms Solvent Atoms 592 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing