☰ Navigation Tabs
Crystal structure of ChoE in complex with acetate and thiocholine (crystal form 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 277 25% PEG 8000, 0.1M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.04 59.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.339 α = 90 b = 110.259 β = 90 c = 84.418 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2019-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 65.973 99.9 0.08 0.083 0.023 18.5 13.1 82313 82313
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.43 99.9 1.254 1.254 1.303 0.35 0.6 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6UQV 1.36 46.2 78099 4177 99.8 0.1599 0.1588 0.1588 0.1791 0.1791 RANDOM 18.957
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 1.22 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.903 r_dihedral_angle_4_deg 18.387 r_dihedral_angle_1_deg 15.574 r_dihedral_angle_3_deg 11.942 r_angle_refined_deg 2.084 r_angle_other_deg 1.598 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.903 r_dihedral_angle_4_deg 18.387 r_dihedral_angle_1_deg 15.574 r_dihedral_angle_3_deg 11.942 r_angle_refined_deg 2.084 r_angle_other_deg 1.598 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2229 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction MOLREP phasing