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Human glycogenin-1 and glycogen synthase-1 complex in the apo mobile state
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 29.332 r_dihedral_angle_2_deg 25.941 r_dihedral_angle_3_deg 17.567 r_dihedral_angle_4_deg 11.065 r_mcangle_it 10.661 r_scbond_it 5.804 r_mcbond_it 5.781 r_dihedral_angle_1_deg 4.721 r_angle_refined_deg 1.237 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 29.332 r_dihedral_angle_2_deg 25.941 r_dihedral_angle_3_deg 17.567 r_dihedral_angle_4_deg 11.065 r_mcangle_it 10.661 r_scbond_it 5.804 r_mcbond_it 5.781 r_dihedral_angle_1_deg 4.721 r_angle_refined_deg 1.237 r_chiral_restr 0.113 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human glycogenin-1 and glycogen synthase-1 complex in the apo ordered state
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 7 sec blotting time, 15 blot force
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 184341 Reported Resolution (Å) 3.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 45
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 700 Maximum Defocus (nm) 2400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v3.3.2 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC v3.3.2 MODEL FITTING MOLREP MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT cryoSPARC v3.3.2 FINAL EULER ASSIGNMENT cryoSPARC v3.3.2 CLASSIFICATION cryoSPARC v3.3.2 RECONSTRUCTION cryoSPARC v3.3.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION CTF correction was performed in batch in early steps. CTF correction was performed on per particle bases in the last iterations 914196