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Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.697 r_dihedral_angle_3_deg 18.588 r_long_range_B_refined 13.748 r_dihedral_angle_4_deg 10.606 r_dihedral_angle_1_deg 5.072 r_mcangle_it 2.694 r_mcbond_it 1.421 r_angle_refined_deg 1.101 r_scbond_it 0.665 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.697 r_dihedral_angle_3_deg 18.588 r_long_range_B_refined 13.748 r_dihedral_angle_4_deg 10.606 r_dihedral_angle_1_deg 5.072 r_mcangle_it 2.694 r_mcbond_it 1.421 r_angle_refined_deg 1.101 r_scbond_it 0.665 r_chiral_restr 0.097 r_gen_planes_refined 0.007 r_bond_refined_d 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Human glycogenin-1 and glycogen synthase-1 complex in the presence of glucose-6-phosphate
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details 9 sec blotting time, 15 blot force
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 451737 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 45
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 700 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC v3.3.2 MODEL FITTING MOLREP MODEL REFINEMENT REFMAC INITIAL EULER ASSIGNMENT cryoSPARC v3.3.2 FINAL EULER ASSIGNMENT cryoSPARC v3.3.2 CLASSIFICATION cryoSPARC v3.3.2 RECONSTRUCTION cryoSPARC v3.3.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION CTF correction was performed in batch in early steps. CTF correction was performed on per particle bases in the last iterations 1383196