☰ Navigation Tabs
Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TTM 6TTM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 3350, sodium formate, strontium chloride
Crystal Properties Matthews coefficient Solvent content 2.16 43.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.851 α = 90 b = 79.25 β = 111.12 c = 56.019 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2020-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 100 0.076 0.03 0.996 24.2 7.5 54598
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.56 99.6 0.795 0.343 0.734 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6TTM 1.532 41.873 54598 2690 99.484 0.182 0.1812 0.1906 0.2077 0.2146 15.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.006 0.002 0.004 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.908 r_dihedral_angle_4_deg 11.928 r_dihedral_angle_3_deg 11.525 r_dihedral_angle_1_deg 6.624 r_lrange_it 3.596 r_lrange_other 3.595 r_scangle_it 1.712 r_scangle_other 1.711 r_mcangle_it 1.465 r_mcangle_other 1.465
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.908 r_dihedral_angle_4_deg 11.928 r_dihedral_angle_3_deg 11.525 r_dihedral_angle_1_deg 6.624 r_lrange_it 3.596 r_lrange_other 3.595 r_scangle_it 1.712 r_scangle_other 1.711 r_mcangle_it 1.465 r_mcangle_other 1.465 r_angle_other_deg 1.24 r_angle_refined_deg 1.231 r_scbond_it 1.059 r_scbond_other 1.059 r_mcbond_it 0.828 r_mcbond_other 0.828 r_symmetry_nbd_refined 0.24 r_nbd_refined 0.198 r_symmetry_nbd_other 0.164 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.127 r_symmetry_metal_ion_refined 0.109 r_symmetry_xyhbond_nbd_refined 0.104 r_nbd_other 0.097 r_metal_ion_refined 0.076 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.059 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2579 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling REFMAC phasing