☰ Navigation Tabs
Crystal structure of FAD reductase CtcQ from Kitasatospora aureofaciens in complex with FAD and NAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4L82
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 0.6 M KH2PO4,0.6 M NaH2PO4, 0.1 M Tris pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.12 41.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.739 α = 90 b = 123.598 β = 99.1 c = 102.698 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 96.4 0.138 0.978 8.9 3.4 49072 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 95.4 0.568 0.696 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4L82 2.45 34.97 46528 2512 95.41 0.1967 0.1935 0.2557 0.2355 RANDOM 21.327
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.13 0.63 -1.36 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.505 r_dihedral_angle_4_deg 18.008 r_dihedral_angle_3_deg 16.878 r_dihedral_angle_1_deg 7.449 r_angle_other_deg 2.329 r_angle_refined_deg 1.349 r_chiral_restr 0.051 r_bond_other_d 0.035 r_gen_planes_refined 0.005 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.505 r_dihedral_angle_4_deg 18.008 r_dihedral_angle_3_deg 16.878 r_dihedral_angle_1_deg 7.449 r_angle_other_deg 2.329 r_angle_refined_deg 1.349 r_chiral_restr 0.051 r_bond_other_d 0.035 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_refined_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10011 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 847
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing