8COG

Human arginylated beta-actin


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.528
r_lrange_it36.106
r_lrange_other36.105
r_scangle_it21.726
r_scangle_other21.721
r_dihedral_angle_4_deg17.907
r_dihedral_angle_3_deg17.594
r_mcangle_it17.088
r_mcangle_other17.085
r_scbond_it12.834
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.528
r_lrange_it36.106
r_lrange_other36.105
r_scangle_it21.726
r_scangle_other21.721
r_dihedral_angle_4_deg17.907
r_dihedral_angle_3_deg17.594
r_mcangle_it17.088
r_mcangle_other17.085
r_scbond_it12.834
r_scbond_other12.834
r_mcbond_it10.347
r_mcbond_other10.345
r_dihedral_angle_1_deg7.048
r_angle_refined_deg1.635
r_angle_other_deg1.342
r_nbd_refined0.21
r_symmetry_nbd_other0.193
r_nbtor_refined0.166
r_xyhbond_nbd_refined0.155
r_symmetry_nbtor_other0.077
r_chiral_restr0.071
r_symmetry_xyhbond_nbd_other0.06
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.001
Sample
Polymerised arginylated actin with bound ADP
Specimen Preparation
Sample Aggregation StateHELICAL ARRAY
Vitrification InstrumentLEICA EM GP
Cryogen NameETHANE-PROPANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles42701
Reported Resolution (Å)3.499
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsRELION 3.09 was used throughout using helical reconstruction.
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)42
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)700
Maximum Defocus (nm)1500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification75000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONRELION3.09
CTF CORRECTIONRELION
MODEL FITTINGCoot
MODEL REFINEMENTREFMAC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION