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Pa.FabF-C164Q in complex with propan-2-yl 1~{H}-pyrazole-3-carboxylate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.20M ammonium formate and 31.2% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.26 45.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.752 α = 90 b = 65.705 β = 102.11 c = 84.861 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2020-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87313 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.932 51.511 99.2 0.154 0.977 6 3.3 57577
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.932 1.965 99.5 0.55 0.806 2 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 51.56 54761 2812 99.21 0.16765 0.16569 0.1781 0.2069 0.2172 RANDOM 28.224
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.51 0.64 0.79 -2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.08 r_dihedral_angle_4_deg 16.077 r_dihedral_angle_3_deg 13.157 r_dihedral_angle_1_deg 6.999 r_long_range_B_refined 5.564 r_long_range_B_other 5.541 r_scangle_other 4.365 r_scbond_it 2.961 r_scbond_other 2.96 r_mcangle_it 2.672
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.08 r_dihedral_angle_4_deg 16.077 r_dihedral_angle_3_deg 13.157 r_dihedral_angle_1_deg 6.999 r_long_range_B_refined 5.564 r_long_range_B_other 5.541 r_scangle_other 4.365 r_scbond_it 2.961 r_scbond_other 2.96 r_mcangle_it 2.672 r_mcangle_other 2.672 r_mcbond_it 1.96 r_mcbond_other 1.96 r_angle_refined_deg 1.553 r_angle_other_deg 1.369 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6074 Nucleic Acid Atoms Solvent Atoms 432 Heterogen Atoms 127
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing