X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 8CM4 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29320% PEG 3350 (w/v), 0.1 M Tris-HCl pH 8.5 and 0.2 M CaCl2
Crystal Properties
Matthews coefficientSolvent content
2.2946.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.44α = 90
b = 261.055β = 90.576
c = 126.209γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2021-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.9763ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1548.83196.80.9986.72.3248226
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.190.453

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.1548.8312481961224096.7660.1870.1840.239634.843
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.199-1.520.418-0.189
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.847
r_dihedral_angle_4_deg18.391
r_dihedral_angle_3_deg15.213
r_dihedral_angle_1_deg7.818
r_lrange_it6.56
r_lrange_other6.557
r_scangle_other4.914
r_scangle_it4.911
r_mcangle_it4.559
r_mcangle_other4.559
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.847
r_dihedral_angle_4_deg18.391
r_dihedral_angle_3_deg15.213
r_dihedral_angle_1_deg7.818
r_lrange_it6.56
r_lrange_other6.557
r_scangle_other4.914
r_scangle_it4.911
r_mcangle_it4.559
r_mcangle_other4.559
r_scbond_other3.217
r_scbond_it3.215
r_mcbond_it3.102
r_mcbond_other3.102
r_angle_refined_deg1.67
r_angle_other_deg1.255
r_nbd_refined0.206
r_nbd_other0.191
r_symmetry_nbd_other0.186
r_symmetry_xyhbond_nbd_refined0.182
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.165
r_symmetry_nbd_refined0.162
r_chiral_restr0.087
r_symmetry_nbtor_other0.078
r_symmetry_xyhbond_nbd_other0.04
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms37154
Nucleic Acid Atoms
Solvent Atoms963
Heterogen Atoms560

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing