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Crystal structure of Human Serum Albumin in complex with FESAN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XVV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 1.4 M (NH4)2SO4, 1% v/v 1,1,1,3,3,3-hexafluoro-2-propanol
Crystal Properties Matthews coefficient Solvent content 2.54 51.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.668 α = 90 b = 57.817 β = 109.225 c = 129.361 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2022-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU PhotonJet-S 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 19.571 99.6 0.102 0.108 0.035 0.998 13.6 9.7 20485 48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 100 0.793 0.835 0.26 0.933 2.6 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 19.571 19889 994 96.6 0.238 0.2344 0.2389 0.3139 0.3162 71.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.167 3.367 -6.392 1.509
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.56 r_dihedral_angle_6_deg 12.85 r_dihedral_angle_2_deg 12.631 r_lrange_it 11.296 r_lrange_other 11.295 r_scangle_it 8.369 r_scangle_other 8.33 r_mcangle_it 7.611 r_mcangle_other 7.61 r_dihedral_angle_1_deg 6.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.56 r_dihedral_angle_6_deg 12.85 r_dihedral_angle_2_deg 12.631 r_lrange_it 11.296 r_lrange_other 11.295 r_scangle_it 8.369 r_scangle_other 8.33 r_mcangle_it 7.611 r_mcangle_other 7.61 r_dihedral_angle_1_deg 6.179 r_scbond_it 5.302 r_scbond_other 5.196 r_mcbond_it 5.068 r_mcbond_other 5.068 r_angle_refined_deg 1.133 r_angle_other_deg 0.4 r_xyhbond_nbd_refined 0.319 r_nbd_refined 0.24 r_nbd_other 0.227 r_symmetry_nbd_other 0.219 r_symmetry_xyhbond_nbd_refined 0.219 r_nbtor_refined 0.186 r_symmetry_nbd_refined 0.179 r_symmetry_nbtor_other 0.075 r_symmetry_xyhbond_nbd_other 0.062 r_chiral_restr 0.055 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4652 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling MOLREP phasing