8CHP

The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5OBK 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29332% PEG3350, 0.2 M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.3246.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.306α = 90
b = 54.452β = 90
c = 56.405γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2022-09-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1142.311000.0310.0370.019126.3771074
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
111.020.3630.430.2260.9236.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT128.76171000344299.9310.1760.17510.18719.241
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0120.091-0.103
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.631
r_dihedral_angle_3_deg11.403
r_dihedral_angle_1_deg7.495
r_dihedral_angle_2_deg5.681
r_lrange_it5.183
r_lrange_other4.845
r_scangle_it2.472
r_scangle_other2.47
r_chiral_restr_other2.145
r_angle_refined_deg1.903
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.631
r_dihedral_angle_3_deg11.403
r_dihedral_angle_1_deg7.495
r_dihedral_angle_2_deg5.681
r_lrange_it5.183
r_lrange_other4.845
r_scangle_it2.472
r_scangle_other2.47
r_chiral_restr_other2.145
r_angle_refined_deg1.903
r_scbond_it1.632
r_scbond_other1.631
r_mcangle_it1.31
r_mcangle_other1.309
r_mcbond_it0.912
r_mcbond_other0.91
r_angle_other_deg0.869
r_symmetry_xyhbond_nbd_refined0.235
r_xyhbond_nbd_refined0.23
r_nbd_refined0.201
r_symmetry_nbd_other0.198
r_nbtor_refined0.184
r_nbd_other0.165
r_symmetry_nbd_refined0.145
r_chiral_restr0.134
r_symmetry_nbtor_other0.084
r_bond_refined_d0.014
r_gen_planes_refined0.011
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms961
Nucleic Acid Atoms
Solvent Atoms206
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing