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Clindamycin bound to the 50S subunit
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.358 r_long_range_B_refined 7.23 r_long_range_B_other 7.12 r_dihedral_angle_2_deg 6.961 r_dihedral_angle_1_deg 6.732 r_scangle_other 4.292 r_mcangle_it 4.176 r_mcangle_other 4.176 r_scbond_it 2.703 r_scbond_other 2.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.358 r_long_range_B_refined 7.23 r_long_range_B_other 7.12 r_dihedral_angle_2_deg 6.961 r_dihedral_angle_1_deg 6.732 r_scangle_other 4.292 r_mcangle_it 4.176 r_mcangle_other 4.176 r_scbond_it 2.703 r_scbond_other 2.686 r_mcbond_it 2.577 r_mcbond_other 2.577 r_angle_refined_deg 1.262 r_angle_other_deg 0.511 r_chiral_restr 0.05 r_gen_planes_refined 0.01 r_bond_refined_d 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample 70S ribosomes with antibiotic cocktail
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 275137 Reported Resolution (Å) 1.98 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 1000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT REFMAC 5.8.0415
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION