8CCG

The Fk1 domain of FKBP51 in complex with (2R,5S,12S)-12-(thiophen-2-yl)-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29332% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.448.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.821α = 90
b = 48.073β = 90
c = 58.549γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2021-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.348.0799.90.0340.0410.0221186.333862
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.321.5191.8010.9550.6786.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW71.333.92633806175199.820.1680.16650.199819.858
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.4840.1222.362
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.621
r_dihedral_angle_3_deg11.724
r_dihedral_angle_1_deg8.005
r_dihedral_angle_2_deg4.265
r_rigid_bond_restr4.233
r_lrange_it3.519
r_lrange_other3.234
r_scangle_it2.541
r_scangle_other2.54
r_mcangle_it2.355
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg18.621
r_dihedral_angle_3_deg11.724
r_dihedral_angle_1_deg8.005
r_dihedral_angle_2_deg4.265
r_rigid_bond_restr4.233
r_lrange_it3.519
r_lrange_other3.234
r_scangle_it2.541
r_scangle_other2.54
r_mcangle_it2.355
r_mcangle_other2.354
r_scbond_it1.912
r_scbond_other1.91
r_mcbond_it1.892
r_mcbond_other1.891
r_angle_refined_deg1.877
r_chiral_restr_other1.023
r_angle_other_deg0.709
r_nbd_refined0.222
r_symmetry_nbd_other0.191
r_nbtor_refined0.175
r_nbd_other0.163
r_xyhbond_nbd_refined0.134
r_symmetry_xyhbond_nbd_refined0.126
r_symmetry_nbd_refined0.108
r_symmetry_nbtor_other0.087
r_chiral_restr0.085
r_bond_refined_d0.014
r_gen_planes_refined0.012
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms942
Nucleic Acid Atoms
Solvent Atoms160
Heterogen Atoms47

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing