8CCF

The Fk1 domain of FKBP51 in complex with 2-(3-((R)-1-(((S)-1-((S)-2-(5-chlorothiophen-2-yl)pent-4-enoyl)piperidine-2-carbonyl)oxy)-3-(3,4-dimethoxyphenyl)propyl)phenoxy)acetic acid


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4TW7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29320% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties
Matthews coefficientSolvent content
2.3347.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.295α = 90
b = 48.302β = 90
c = 57.238γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2022-03-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.918400BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1248.399.80.0440.0520.0260.99921.779295
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.050.4730.5490.2750.9417.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW7236.486926143699.6020.2110.20890.246346.877
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
7.421-4.017-3.404
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.969
r_dihedral_angle_3_deg12.838
r_dihedral_angle_1_deg8.52
r_lrange_it6.89
r_lrange_other6.887
r_mcangle_other4.553
r_mcangle_it4.548
r_scangle_it4.347
r_scangle_other4.344
r_mcbond_other3.094
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.969
r_dihedral_angle_3_deg12.838
r_dihedral_angle_1_deg8.52
r_lrange_it6.89
r_lrange_other6.887
r_mcangle_other4.553
r_mcangle_it4.548
r_scangle_it4.347
r_scangle_other4.344
r_mcbond_other3.094
r_mcbond_it3.09
r_scbond_it2.909
r_scbond_other2.906
r_dihedral_angle_2_deg2.882
r_angle_refined_deg1.656
r_chiral_restr_other0.748
r_angle_other_deg0.626
r_nbd_refined0.224
r_symmetry_nbd_other0.2
r_nbtor_refined0.18
r_nbd_other0.176
r_xyhbond_nbd_refined0.139
r_symmetry_xyhbond_nbd_refined0.1
r_symmetry_nbd_refined0.093
r_symmetry_nbtor_other0.083
r_chiral_restr0.067
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms934
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms45

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing