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Evernimicin bound to the 50S subunit
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.009 r_long_range_B_refined 8.982 r_long_range_B_other 8.982 r_dihedral_angle_2_deg 7.484 r_dihedral_angle_1_deg 7.142 r_scangle_other 4.412 r_mcangle_it 3.844 r_mcangle_other 3.844 r_scbond_it 2.632 r_scbond_other 2.632
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.009 r_long_range_B_refined 8.982 r_long_range_B_other 8.982 r_dihedral_angle_2_deg 7.484 r_dihedral_angle_1_deg 7.142 r_scangle_other 4.412 r_mcangle_it 3.844 r_mcangle_other 3.844 r_scbond_it 2.632 r_scbond_other 2.632 r_mcbond_it 2.319 r_mcbond_other 2.319 r_angle_refined_deg 1.192 r_angle_other_deg 0.485 r_chiral_restr 0.046 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample 70S ribosomes with antibiotic cocktail
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 514855 Reported Resolution (Å) 1.86 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 44
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT REFMAC 5.8.0415
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION