☰ Navigation Tabs
Discovery of IRAK4 Inhibitor 41
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 none
Crystal Properties Matthews coefficient Solvent content 2.77 55.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.214 α = 90 b = 141.199 β = 124.458 c = 87.919 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 90.583 99.3 0.094 0.998 16.8 4.42 39488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.95 0.523 0.882 3.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 2.7 90.583 39488 746 99.752 0.215 0.2146 0.2187 0.2541 0.2601 57.762
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.186 1.988 -4.382 -0.789
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.178 r_dihedral_angle_4_deg 20.156 r_dihedral_angle_3_deg 15.496 r_lrange_it 12.203 r_lrange_other 12.203 r_scangle_it 9.176 r_scangle_other 9.175 r_mcangle_it 7.673 r_mcangle_other 7.672 r_scbond_it 5.624
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.178 r_dihedral_angle_4_deg 20.156 r_dihedral_angle_3_deg 15.496 r_lrange_it 12.203 r_lrange_other 12.203 r_scangle_it 9.176 r_scangle_other 9.175 r_mcangle_it 7.673 r_mcangle_other 7.672 r_scbond_it 5.624 r_scbond_other 5.623 r_dihedral_angle_1_deg 4.933 r_mcbond_it 4.891 r_mcbond_other 4.891 r_angle_refined_deg 1.253 r_angle_other_deg 1.069 r_symmetry_xyhbond_nbd_refined 0.435 r_nbd_other 0.215 r_symmetry_nbd_refined 0.194 r_symmetry_nbd_other 0.174 r_nbd_refined 0.168 r_nbtor_refined 0.149 r_xyhbond_nbd_refined 0.141 r_ncsr_local_group_2 0.12 r_ncsr_local_group_6 0.118 r_ncsr_local_group_4 0.112 r_ncsr_local_group_5 0.109 r_ncsr_local_group_1 0.107 r_ncsr_local_group_3 0.107 r_xyhbond_nbd_other 0.103 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.041 r_symmetry_xyhbond_nbd_other 0.029 r_chiral_restr_other 0.022 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9039 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing