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Cryo-EM structure of alpha-synuclein singlet filament from Juvenile-onset synucleinopathy
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 7.345 r_long_range_B_other 7.339 r_dihedral_angle_3_deg 6.855 r_dihedral_angle_1_deg 5.742 r_scangle_other 4.83 r_mcangle_it 4.152 r_mcangle_other 4.147 r_scbond_it 2.821 r_scbond_other 2.815 r_mcbond_it 2.338
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 7.345 r_long_range_B_other 7.339 r_dihedral_angle_3_deg 6.855 r_dihedral_angle_1_deg 5.742 r_scangle_other 4.83 r_mcangle_it 4.152 r_mcangle_other 4.147 r_scbond_it 2.821 r_scbond_other 2.815 r_mcbond_it 2.338 r_mcbond_other 2.335 r_angle_refined_deg 0.635 r_angle_other_deg 0.226 r_chiral_restr 0.028 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Alpha-synuclein singlet filament extracted from the human brain with JOS
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 214769 Reported Resolution (Å) 2 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 4.77 Angular Rotation -1.33
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details servalcat
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION CTF CORRECTION RELION MODEL FITTING Coot INITIAL EULER ASSIGNMENT RELION 4.0 CLASSIFICATION RELION RECONSTRUCTION RELION 4.0 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION