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Tankyrase 2 in complex with an inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OM1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277.15 100 mM Tris, 22% w/v PEG3350, 200 mM Li2SO4, 250 mM NaCl, 20% v/v glycerol
Crystal Properties Matthews coefficient Solvent content 2.65 53.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.57 α = 90 b = 97.37 β = 90 c = 119.24 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.96546 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.7 0.999 15.99 5.5 69406
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 0.648
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7OM1 1.6 48.685 69405 3471 99.69 0.187 0.1849 0.1955 0.2194 0.2256 27.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.679 0.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.806 r_dihedral_angle_3_deg 13.13 r_dihedral_angle_1_deg 6.874 r_lrange_it 6.523 r_lrange_other 6.494 r_dihedral_angle_2_deg 6.383 r_scangle_it 4.908 r_scangle_other 4.89 r_mcangle_it 3.553 r_mcangle_other 3.553
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.806 r_dihedral_angle_3_deg 13.13 r_dihedral_angle_1_deg 6.874 r_lrange_it 6.523 r_lrange_other 6.494 r_dihedral_angle_2_deg 6.383 r_scangle_it 4.908 r_scangle_other 4.89 r_mcangle_it 3.553 r_mcangle_other 3.553 r_scbond_it 3.297 r_scbond_other 3.279 r_mcbond_it 2.496 r_mcbond_other 2.488 r_angle_refined_deg 1.874 r_angle_other_deg 0.612 r_nbd_refined 0.223 r_symmetry_nbd_refined 0.213 r_symmetry_nbd_other 0.199 r_nbtor_refined 0.181 r_nbd_other 0.153 r_xyhbond_nbd_refined 0.133 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing