8B2R

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza sativa) RGA5 HMA domain mutant.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7B1I

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	291.15	0.1 M BIS-TRIS pH 5.5 25% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
1.93	36.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 31.906	α = 90
b = 57.896	β = 90
c = 76.657	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-11-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97949	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.22	46.242	99.4	0.069	1	14.5	11.5		42985

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.22	1.24			1.719	0.324

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7B1I	1.22	46.242	42836	2125	99.397	0.153	0.1502	0.2037	16.484

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.955			0.582		1.373

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.16
r_dihedral_angle_3_deg	13.677
r_dihedral_angle_2_deg	9.678
r_dihedral_angle_1_deg	6.728
r_rigid_bond_restr	5.437
r_lrange_it	4.218
r_lrange_other	4.129
r_scangle_it	3.984
r_scangle_other	3.982
r_scbond_it	3.575
r_scbond_other	3.573
r_mcangle_it	2.644
r_mcangle_other	2.642
r_mcbond_it	2.207
r_mcbond_other	2.207
r_angle_refined_deg	1.808
r_angle_other_deg	0.614
r_symmetry_xyhbond_nbd_refined	0.328
r_xyhbond_nbd_refined	0.289
r_nbd_refined	0.286
r_symmetry_nbd_refined	0.275
r_nbd_other	0.236
r_symmetry_xyhbond_nbd_other	0.21
r_symmetry_nbd_other	0.206
r_nbtor_refined	0.173
r_chiral_restr	0.101
r_symmetry_nbtor_other	0.088
r_bond_refined_d	0.013
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1282
Nucleic Acid Atoms
Solvent Atoms	180
Heterogen Atoms	11

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing