8B1L
NMR structure of the antimicrobial peptide Of-Pis1 in DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-13C HSQC aliphatic | 3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate | 90% H2O/10% D2O | 40 mM | 5 | 1 atm | 298 | Bruker AVANCE 600 |
2 | 2D 1H-13C HSQC aromatic | 3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate | 90% H2O/10% D2O | 40 mM | 5 | 1 atm | 298 | Bruker AVANCE 600 |
3 | 2D 1H-1H TOCSY | 3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate | 90% H2O/10% D2O | 40 mM | 5 | 1 atm | 298 | Bruker AVANCE 600 |
4 | 2D 1H-1H NOESY | 3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate | 90% H2O/10% D2O | 40 mM | 5 | 1 atm | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | the structures are based on a total of 453 NOE-derived distances constraints and 17 dihedral angles restraints | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
5 | data analysis | NMRView | Johnson, One Moon Scientific | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific |