8B1L

NMR structure of the antimicrobial peptide Of-Pis1 in DPC micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aliphatic3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate90% H2O/10% D2O40 mM51 atm298Bruker AVANCE 600
22D 1H-13C HSQC aromatic3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate90% H2O/10% D2O40 mM51 atm298Bruker AVANCE 600
32D 1H-1H TOCSY3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate90% H2O/10% D2O40 mM51 atm298Bruker AVANCE 600
42D 1H-1H NOESY3 mM Of-Pis1, 60 mM [U-2H] DPC, 20 mM sodium phosphate90% H2O/10% D2O40 mM51 atm298Bruker AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structures are based on a total of 453 NOE-derived distances constraints and 17 dihedral angles restraintsX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
5data analysisNMRViewJohnson, One Moon Scientific
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4peak pickingNMRViewJohnson, One Moon Scientific