8ATS

Small molecular stabilizer for C-RAF (pS259) and 14-3-3 (1075306)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2770.095 M HEPES (pH 7.1), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties
Matthews coefficientSolvent content
2.652.66

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.627α = 90
b = 112.368β = 90
c = 62.575γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-11-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, DESY BEAMLINE P111.033220PETRA III, DESYP11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.445.4699.8125.21.956825
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.420.889

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3iqu1.445.4653923290299.780.148190.146930.1706RANDOM22.614
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.87-0.86-1.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.814
r_dihedral_angle_4_deg13.026
r_dihedral_angle_3_deg11.402
r_dihedral_angle_1_deg4.508
r_long_range_B_refined3.802
r_long_range_B_other3.708
r_scangle_other3.384
r_mcangle_other2.594
r_mcangle_it2.593
r_scbond_it2.573
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.814
r_dihedral_angle_4_deg13.026
r_dihedral_angle_3_deg11.402
r_dihedral_angle_1_deg4.508
r_long_range_B_refined3.802
r_long_range_B_other3.708
r_scangle_other3.384
r_mcangle_other2.594
r_mcangle_it2.593
r_scbond_it2.573
r_scbond_other2.571
r_mcbond_it1.866
r_mcbond_other1.854
r_rigid_bond_restr1.501
r_angle_refined_deg1.322
r_angle_other_deg1.26
r_chiral_restr0.082
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1930
Nucleic Acid Atoms
Solvent Atoms183
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing